* Package:    dev-perl/Bio-DB-HTS-3.10.0
 * Repository: gentoo
 * Maintainer: marecki@gentoo.org sci-biology@gentoo.org
 * USE:        abi_x86_32 elibc_glibc kernel_linux userland_GNU x86
 * FEATURES:   network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox
 * Applying 2.11-build_split_htslib_opts.patch ...
 [ ok ]
 * Using Module::Build
 * perl Build.PL --installdirs=vendor --libdoc= --destdir=/var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/ --create_packlist=1 --htslib-includedir=/usr/include/htslib --htslib-libdir=/usr/lib
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-DB-HTS' version '3.01'
Building Bio-DB-HTS
i686-pc-linux-gnu-gcc -I/usr/include -I/usr/lib/perl5/5.30.1/i686-linux/CORE -DVERSION="3.01" -DXS_VERSION="3.01" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wno-error -Wno-unused-result -c -fwrapv -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -g -ggdb -Werror=format-security -O2 -pipe -march=native -g -ggdb -o lib/Bio/DB/HTS.o lib/Bio/DB/HTS.c
lib/Bio/DB/HTS.xs: In function ‘XS_Bio__DB__HTS__VCF__Header_fmt_text’:
lib/Bio/DB/HTS.xs:1769:5: warning: ‘bcf_hdr_fmt_text’ is deprecated: use bcf_hdr_format() instead [-Wdeprecated-declarations]
 1769 |     RETVAL = newSVpv(bcf_hdr_fmt_text(header, is_bcf, &len), 0);
      |     ^~~~~~
In file included from lib/Bio/DB/HTS.xs:59:
/usr/include/htslib/vcf.h:439:11: note: declared here
  439 |     char *bcf_hdr_fmt_text(const bcf_hdr_t *hdr, int is_bcf, int *len)
      |           ^~~~~~~~~~~~~~~~
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/HTS/HTS.bs')
i686-pc-linux-gnu-gcc -shared -O2 -pipe -march=native -g -ggdb -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o blib/arch/auto/Bio/DB/HTS/HTS.so lib/Bio/DB/HTS.o -L/usr/lib -Wl,-rpath,/usr/lib -lhts -lpthread -lz
i686-pc-linux-gnu-gcc -I/usr/include -I/usr/lib/perl5/5.30.1/i686-linux/CORE -DVERSION="3.01" -DXS_VERSION="3.01" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wno-error -Wno-unused-result -c -fwrapv -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -g -ggdb -Werror=format-security -O2 -pipe -march=native -g -ggdb -o lib/Bio/DB/HTS/Faidx.o lib/Bio/DB/HTS/Faidx.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/HTS/Faidx/Faidx.bs')
i686-pc-linux-gnu-gcc -shared -O2 -pipe -march=native -g -ggdb -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o blib/arch/auto/Bio/DB/HTS/Faidx/Faidx.so lib/Bio/DB/HTS/Faidx.o -L/usr/lib -Wl,-rpath,/usr/lib -lhts -lpthread -lz
 * Skipping make test/check due to ebuild restriction.
 * ./Build install --pure
Building Bio-DB-HTS
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/HTS.so
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/HTS.bs
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/Faidx/Faidx.so
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/Faidx/Faidx.bs
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/FetchIterator.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/ReadIterator.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/ConfigData.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/AlignWrapper.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Segment.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/PileupWrapper.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/VCF.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Target.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Tabix.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Pileup.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Kseq.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Alignment.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Faidx.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Constants.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Query.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Tabix/Iterator.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Kseq/Iterator.pod
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/Kseq/Record.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/VCF/HeaderPtr.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/VCF/Header.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/VCF/Row.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/VCF/Iterator.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/lib/perl5/vendor_perl/5.30.1/i686-linux/Bio/DB/HTS/VCF/RowPtr.pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Kseq.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Faidx.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Constants.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::PileupWrapper.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Pileup.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Alignment.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Target.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Query.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Kseq::Record.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::ConfigData.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::VCF::Iterator.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Segment.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::AlignWrapper.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Kseq::Iterator.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Tabix::Iterator.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::VCF.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::ReadIterator.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::FetchIterator.3pm
Installing /var/tmp/portage/dev-perl/Bio-DB-HTS-3.10.0/image/usr/share/man/man3/Bio::DB::HTS::Tabix.3pm
 * Fixing packlist file /usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/.packlist
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::AlignWrapper.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Alignment.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::ConfigData.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Constants.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Faidx.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::FetchIterator.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Kseq.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Kseq::Iterator.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Kseq::Record.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Pileup.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::PileupWrapper.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Query.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::ReadIterator.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Segment.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Tabix.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Tabix::Iterator.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::Target.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::VCF.3pm
 * Pruning surplus packlist entry /usr/share/man/man3/Bio::DB::HTS::VCF::Iterator.3pm
 * Final size of build directory: 8780 KiB (8.5 MiB)
 * Final size of installed tree:   820 KiB